Publications

ACEGID is committed to sharing our discoveries with the scientific community. We have published scores of articles in high-impact, peer-reviewed journals. Analysis made by Elsevier on behalf of World Bank showed that our publications were the most impactful among all ACEs and were three times the world average. The analysis showed that ACEGID had the largest number of scholarly citations among all ACEs (30% of all ACE scholarly citations). 

Below are some of our publications.

George, U.; George, O.; Oragwa, A.; Motayo, B.; Kamani, J.; Adamu, A.; Sowemimo, O.; Adeleke, R.; Abalaka, S.; Sani, N.; Oguzie, J.; Eromon, P.; Folarin, O.; Happi, A.; Komolafe, I.; Happi, C. Detection of Alpha- and Betacoronaviruses in Frugivorous and Insectivorous Bats in Nigeria. Pathogens 202211, 1017. https://doi.org/10.3390/pathogens11091017

Oguzie, J.U., Nwangwu, U.C., Oluniyi, P.E. et al. Metagenomic sequencing characterizes a wide diversity of viruses in field mosquito samples in Nigeria. Sci Rep 12, 7616 (2022). https://doi.org/10.1038/s41598-022-11797-2

Oluniyi PE, Ajogbasile F, Oguzie J, Uwanibe J, Kayode A, Happi A, Ugwu A, Olumade T, Ogunsanya O, Eromon PE, Folarin O, Frost SDW, Heeney J, Happi CT. 2021. VGEA: an RNA viral assembly toolkit.  PeerJ 9:e12129 https://doi.org/10.7717/peerj.12129

Oluniyi, Paul E.; Ajogbasile, Fehintola V.; Zhou, Shuntaic; Fred-Akintunwa, Iyanuoluwa; Polyak, Christina S.; Ake, Julie A.; Tovanabutra, Sodsaid; Iroezindu, Michael; Rolland, Morganed; Happi, Christian T. HIV-1 drug resistance and genetic diversity in a cohort of people with HIV-1 in Nigeria, AIDS: January 1, 2022 – Volume 36 – Issue 1 – p 137-146 doi: 10.1097/QAD.0000000000003098 

Olawoye, I.B., Uwanibe, J.N., Kunle-Ope, C.N. et al. Whole genome sequencing of clinical samples reveals extensively drug resistant tuberculosis (XDR TB) strains from the Beijing lineage in Nigeria, West Africa. Sci Rep11, 17387 (2021). https://doi.org/10.1038/s41598-021-96956-7

Ayoade, F., Oguzie, J., Eromon, P. et al. Molecular surveillance of shiga toxigenic Escherichia coli in selected beef abattoirs in Osun State NigeriaSci Rep11, 13966 (2021). https://doi.org/10.1038/s41598-021-93347-w

Fehintola V. Ajogbasile, Adeyemi T. Kayode, Paul E. Oluniyi, Kazeem O. Akano, Jessica N. Uwanibe, Benjamin B. Adegboyega, Courage Philip, Oluwagboadurami G. John, Philomena J. Eromon, George Emechebe, Finimo Finimo, Nnenna Ogbulafor, Nma Jiya, Uche Okafor, Jose Ambe, Robinson D. Wammanda, Stephen Oguche, Olugbenga A. Mokuolu, Akintunde Sowunmi, Onikepe A. Folarin and Christian T. Happi (2021). Genetic diversity and population structure of Plasmodium falciparum in Nigeria: insights from microsatellite loci analysis. Malaria Journal https://doi.org/10.1186/s12936-021-03734-x

Olawoye IB, Frost SDW, Happi CT. 2020. The Bacteria Genome Pipeline (BAGEP): an automated, scalable work-
flow for bacteria genomes with Snakemake.
 PeerJ 8:e10121 http://doi.org/10.7717/peerj.10121

Adeyemi T Kayode, Kazeem Akano, Fehintola V Ajogbasile, Jessica N Uwanibe, Paul E Oluniyi, Bolajoko E Bankole, Philomena J Eromon, Akintunde Sowunmi, Onikepe A Folarin, Sarah K Volkman, Bronwyn McInnis, Pardis Sabeti, Dyann F Wirth, Christian T Happi. (2020). Polymorphisms in Plasmodium falciparum chloroquine resistance transporter (Pfcrt) and multidrug-resistant gene 1 (Pfmdr-1) in Nigerian children 10 years post-adoption of artemisinin-based combination treatments. Science Direct. doi.org/10.1016/j.ijpara.2020.10.001

Jon Arizti-Sanz, Catherine A. Freije, Alexandra C. Stanton, Brittany A. Petros, Chloe K. Boehm, Sameed Siddiqui, Bennett M. Shaw, Gordon Adams, Tinna-Solveig F. Kosoko-Thoroddsen, Molly E. Kemball, Jessica N. Uwanibe, Fehintola V. Ajogbasile, Philomena E. Eromon, Robin Gross, Loni Wronka, Katie Caviness, Lisa E. Hensley, Nicholas H. Bergman, Bronwyn L. MacInnis, Christian T. Happi, Jacob E. Lemieux, Pardis C. Sabeti & Cameron Myhrvold. (2020). Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2. Nature Communications. doi.org/10.1038/s41467-020-19097-x

Sakabe S, Hartnett JN, Ngo N, Goba A, Momoh M, Demby Sandi J, Kanneh L, Cubitt B, Garcia SD, Ware BC, Kotliar D, Robles-Sikisaka R, Gangavarapu K, Branco LM, Eromon P, Odia I, Ogbaini-Emovon E, Folarin O, Okogbenin S, Okokhere PO, Happi C, Sabeti PC, Andersen KG, Garry RF, de la Torre JC, Grant DS, Schieffelin JS, Oldstone MBA, Sullivan BM. (2020). Identification of common CD8+ T cell Epitopes from Lassa Fever Survivors in Nigeria and Sierra Leone. J Virol. 2020 Apr 8. pii: JVI.00153-20. doi: 10.1128/JVI.00153-20.

Sullivan BM, Sakabe S, Hartnett JN, Ngo N, Goba A, Momoh M, Demby Sandi J, Kanneh L, Cubitt B, Garcia SD, Ware BC, Kotliar D, Robles-Sikisaka R, Gangavarapu K, Branco L, Eromon P, Odia I, Ogbaini-Emovon E, Folarin O, Okogbenin S, Okokhere PO, Happi C, de la Torre JC, Sabeti PC, Andersen KG, Garry RF, Grant DS, Schieffelin JS, Oldstone MBA. (2020). High Cross reactivity of Human T Cell responses between Lassa virus lineages. PLoS Pathog.16(3):e1008352. doi: 10.1371/journal.ppat.1008352. eCollection

Robert W. Cross, Rong Xu, Stefan Hamm, Demetrius Matassov, Theresa E. Latham, Cheryl S. Gerardi, Rebecca M. Nowak, Joan B. Geisbert, Ayuko Ota-Setlik, Krystle N. Agans, Amara Luckay, Susan E. Witko, Lena Soukieh, Daniel J. Deer, Chad E. Mire, Christian Happi, Karla A. Fenton, John H. Eldridge, Thomas W. Geisbert. (2019). Quadrivalent Vesiculovax vaccine protects nonhuman primates from lethal challenge against two species of Ebola virus, Marburg virus, and Lassa virus. Journal of Clinical Investigation 130(1):539-551. doi: 10.1172/JCI131958.

Ajogbasile FV, Oguzie JU, Oluniyi PE, Eromon PE, Uwanibe JN, Mehta SB, Siddle KJ, Odia I, Winnicki SM, Akpede N, Akpede G, Okogbenin S, Ogbaini-Emovon E, MacInnis BL, Folarin OA, Modjarrad K, Schaffner SF, Tomori O, Ihekweazu C, Sabeti PC, Happi CT. (2020). Real-time Metagenomic Sequencing Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria. Sci Rep. 2020 Feb 21;10(1):3180. doi: 10.1038/s41598-020-59880-w.

Tosin Segun Ogunbiyi, Philomena Eromon, Paul Oluniyi, Femi Ayoade, Owoicho Oloche, Judith Uche Oguzie, Onikepe Folarin, Christian Happi & Isaac Komolafe. (2019). First report of Wolbachia from field populations of Culex mosquitoes in south-western Nigeria. African Zoology 2019, 54(3): 181–185

Akano K, Fatunmbi B, Ntadom G, Ayede AI, Aderoyeje T, Bakre A, Alebiosu OT, Akpoborie O, Okafor C, Gbotosho GO, Folarin OA, Ebenebe JC, Ambe J, Wammanda R, Jiya N, Finomo F, Emechebe G, Mokuolu O, Agomo C, Oguche S, Happi C, Sowunmi A. (2019). Clinical Illness and outcomes in Nigerian children with persistent early appearing anaemia following initiation of artemisinin-based combination treatmets of uncomplicated falciparum malaria. Parasite.26:56. doi: 10.1051/parasite/2019058. Epub 2019 Sep 13. PMID:31516119

Happi AN, Happi CT, Schoepp RJ. (2019). Lassa fever diagnostics: past, present and future. Curr Opin Virol. 37:132-138. doi: 10.1016/j.coviro.2019.08.002. Epub 2019 Sep 11. PMID: 31518896.

Accordion ConSowunmi A, Ntadom G, Akano K, Ibironke FO, Ayede AI, Agomo C, Folarin OA, Gbotosho GO, Happi C, Oguche S, Okafor HU, Meremikwu M, Agomo P, Ogala W, Watila I, Mokuolu O, Finomo F, Ebenebe JC, Jiya N, Ambe J, Wammanda R, Emechebe G, Oyibo W, Useh F, Aderoyeje T, Dokunmu TM, Alebiosu OT, Amoo S, Basorun OK, Wewe OA, Okafor C, Akpoborie O, Fatunmbi B, Adewoye EO, Ezeigwe NM, Oduola A.(2019). Declining responsiveness of childhood Plasmodium falciparum infections to artemisinin-based combination treatments ten years following deployment as first-line antimalarials in Nigeria. Infectious Diseases of Poverty. 6;8(1):69. doi: 10.1186/s40249-019-0577-x. PMID: 31383040tent

Okogbenin S, Okoeguale J, Akpede G, Colubri A, Barnes KG, Mehta S, Eifediyi R, Okogbo F, Eigbefoh J, Momoh M, Rafiu M, Adomeh D, Odia I, Aire C, Atafo R, Okonofua M, Pahlman M, Becker-Ziaja B, Asogun D, Okokhere P, Happi C, Günther S, Sabeti PC, Ogbaini-Emovon E. (2019). Retrospectve Cohort Study of Lassa fever in Pregnancy, Southern Nigeria. Emerging Infectious Diseases. 25(8). doi: 10.3201/eid2508.181299. PMID: 31310586

Ogunro BN, Olugasa BO, Kayode A, Ishola OO, Kolawole ON, Odigie EA, Happi C. (2019). Detection of Antobody and Antigen for Lassa virus Nucleoprotein in Monkeys from Southern Nigeria. J Epidemiol Glob Health. 9(2):125-127. doi: 10.2991/jegh.k.190421.001.PMID: 31241870.

Happi N. Anise, Ugwu A. Chinedu, Happi T. Christian. (2019). Preparing for the next Ebola outbreak: in-country genomic capacity in Africa. Lancet Infectious Diseasesdoi: 10.1016/S1473-3099(19)30173-2.

Hayden C. Metsky, Katherine J. Siddle, Adrianne Gladden-Young, James Qu, David K. Yang, Patrick Brehio, Andrew Goldfarb, Anne Piantadosi, Shirlee Wohl, Amber Carter, Aaron E. Lin, Kayla G. Barnes, Damien C. Tully, Bjӧrn Corleis, Scott Hennigan, Giselle Barbosa-Lima, Yasmine R. Vieira, Lauren M. Paul, Amanda L. Tan, Kimberly F. Garcia, Leda A. Parham, Ikponmwonsa Odia, Philomena Eromon, Onikepe A. Folarin, Augustine Goba, Viral Hemorrhagic Fever Consortium, Etienne Simon-Lorière, Lisa Hensley, Angel Balmaseda, Eva Harris, Douglas Kwon, Todd M. Allen, Jonathan A. Runstadler, Sandra Smole, Fernando A. Bozza, Thiago M. L. Souza, Sharon Isern, Scott F. Michael, Ivette Lorenzana, Lee Gehrke, Irene Bosch, Gregory Ebel, Donald Grant, Christian Happi, Daniel J. Park, Andreas Gnirke, Pardis C. Sabeti, Christian B. Matranga. (2019). Capturing diverse microbial sequence with comprehensive and scalable probe design. Nature Biotechnology. 37(2):160-168. doi: 10.1038/s41587-018-0006-x. Epub 2019 Feb 4.

Bankole BE, Kayode AT, Nosamiefan IO, Eromon P, Baniecki ML, Daniels RF, Hamilton EJ, Durfee K, MacInnis B, Okafor H, Sowunmi A, Volkman SK, Sabeti P, Wirth D, Happi CT, Folarin OA. (2018). Characterization of Plasmodium falciparum structure in Nigeria with malaria SNPS barcode. Malaria Journal. 17(1):472. doi: 10.1186/s12936-018-2623-8.

Akano K, Ntadom G, Agomo C, Happi CT, Folarin OA, Gbotosho GO, Mokuolu O, Finomo F, Ebenebe JC, Jiya N, Ambe J, Wammanda R, Emechebe G, Basorun OK, Wewe OA, Amoo S, Ezeigwe N, Oguche S, Fatunmbi B, Sowunmi A. (2018). Parasite reduction ratio one day after initiation of artemisinin-based combination therapies and its relationship with parasite clearance time in acutely malarious children. Infectious Diseases of Poverty7(1):122. doi: 10.1186/s40249-018-0503-7.

Katherine J. Siddle, Philomena Eromon, Kayla G. Barnes, Samar Mehta, Judith U. Oguzie, Ikponmwosa Odia, Stephen F. Schaffner, Sarah M. Winnicki, Rickey R. Shah, James Qu, Shirlee Wohl, Patrick Brehio, Christopher Iruolagbe, John Aiyepada, Eghosa Uyigue, Patience Akhilomen, Grace Okonofua, Simon Ye, Tolulope Kayode, Fehintola Ajogbasile, Jessica Uwanibe, Amy Gaye, Mambu Momoh, Bridget Chak, Dylan Kotliar, Amber Carter, Adrianne Gladden-Young, Catherine A. Freije, Omigie Omoregie, Blessing Osiemi, Ekene B. Muoebonam, Michael Airende, Rachael Enigbe, Benevolence Ebo, Iguosadolo Nosamiefan, Paul Oluniyi, Mahan Nekoui, Ephraim Ogbaini-Emovon, Robert F. Garry, Kristian G. Andersen, Daniel J. Park, Nathan L. Yozwiak, George Akpede, Chikwe Ihekweazu, Oyewale Tomori, Sylvanus Okogbenin, Onikepe A. Folarin, Peter O. Okokhere, Bronwyn L. MacInnis, Pardis C. Sabeti, and Christian T. Happi. Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018. New England Journal of Medicine, DOI: 10.1056/NEJMoa1804498

Okokhere Peter, FWACP, Erameh Cyril, Alikah Francis, Akhideno Peter, Iruolagbe Christopher, Osazuwa Omoregie, Bankole Idowu, Adomeh Donatus, Odia Ikponmwosa, Aire Chris, Oyakhilome Jennifer, Agbukor Jacqueline, Atafo Rebecca, Asogun Danny, Happi Christian, Sabeti Pardis, Günther Stephan, George Akpede. (2018). Acute Lassa Virus Encephalitis with Lassa Virus in the Cerebrospinal fluid, but absent in the blood: A Case Report of a Positive Outcome. Case Reports in Neurology. 10:150–158. DOI: 10.1159/000490374.

Joy C. Ebenebe, Godwin Ntadom, Jose Ambe, Robinson Wammanda, Nma Jiya, Finomo Finomo, George Emechebe, Olugbenga Mokuolu, Kazeem Akano, Chimere Agomo, Onikepe A. Folarin, Stephen Oguche, Francis Useh, Wellington Oyibo, Temitope Aderoyeje, Mohammed Abdulkadir, Nnenna M. Ezeigwe, Christian Happi, Akintunde Sowunmi. (2018). Efficacy of Artemisinin-Based Combination Treatments of Uncomplicated Falciparum Malaria in Under-Five-Year-Old Nigerian Children Ten Years Following Adoption as First-line Antimalarials. (2018). American Journal of Tropical Medicine and Hygiene. 99(3):649-664. doi: 10.4269/ajtmh.18-0115.

Herrera BB, Hamel DJ, Oshun P, Akinsola R, Akanmu AS, Chang CA, Eromon P, Folarin O, Adeyemi KT, Happi CT, Lu Y, Ogunsola F, Kanki PJ. (2018). A modified anthrax toxin-based enzyme-linked immunospot assay reveals robust T cell responses in symptomatic and asymptomatic Ebola virus exposed individuals. PLoS Neglected Tropical Diseases. 24;12(5):e0006530. doi: 10.1371/journal.pntd.0006530.

Boisen ML, Hartnett JN, Shaffer JG, Goba A, Momoh M, Sandi JD, Fullah M, Nelson DKS, Bush DJ, Rowland MM, Heinrich ML, Koval AP, Cross RW, Barnes KG, Lachenauer AE, Lin AE, Nekoui M, Kotliar D, Winnicki SM, Siddle KJ, Gbakie M, Fonnie M, Koroma VJ, Kanneh L, Kulakosky PC, Hastie KM, Wilson RB, Andersen KG, Folarin OO, Happi CT, Sabeti PC, Geisbert TW, Saphire EO, Khan SH, Grant DS, Schieffelin JS, Branco LM, Garry RF. (2018). Field Validation of recombinant antigen immunoassays for diagnosis of Lassa fever. Scientific Reports8(1):5939. doi: 10.1038/s41598-018-24246-w.

Yinka-Ogunleye A, Aruna O, Ogoina D, Aworabhi N, Eteng W, Badaru S, Mohammed A, Agenyi J, Etebu EN, Numbere TW, Ndoreraho A, Nkunzimana E, Disu Y, Dalhat M, Nguku P, Mohammed A, Saleh M, McCollum A, Wilkins K, Faye O, Sall A, Happi C, Mba N, Ojo O, Ihekweazu C. (2018). Emerging Infectious Diseases. 24 (6):1149-1151.doi: 10.3201/eid2406.180017

Okokhere P, Colubri A, Azubike C, Iruolagbe C, Osazuwa O, Tabrizi S, Chin E, Asad S, Ediale E, Rafiu M, Adomeh D, Odia I, Atafo R, Aire C, Okogbenin S, Pahlman M, Becker-Ziaja B, Asogun D, Fradet T, Fry B, Schaffner SF, Happi C, Akpede G, Günther S, Sabeti PC. (2018). Clinical and laboratory predictors of Lassa fever outcome in a dedicated treatment facility in Nigeria: a retrospective, observational cohort studyLancet Infectious Diseases. 18(6):684-695. doi: 10.1016/S1473-3099(18)30121-X.

Akintunde Sowunmi, Bayo Fatunmbi, Kazeem Akano, Olubunmi A. Wewe, Chimere Agomo, Finomo Finomo, Joy Ebenebe, Nma Jiya, Jose Ambe, Robinson Wammanda, Godwin Ntadom, Olugbenga Mokuolu, George Emechebe, Nnenna Ezeigwe, Adejumoke I. Ayede, Elsie O. Adewoye, Grace O. Gbotosho, Onikepe A. Folarin, Christian T. Happi, Stephen Oguche, Wellington A. Oyibo, and Francis Useh. (2017). Factors contributing to anaemia after uncomplicated falciparum malaria in under five year-old Nigerian children ten years following adoption of artemisinin-based combination therapies as first-line antimalarials. BMC Infectious Diseases. 17 (781):1-18. DOI 10.1186/s12879-017-2876-9.

Akhuemokhan OC, Ewah-Odiase RO, Akpede N, Ehimuan J, Adomeh DI, Odia I, Olomu SC, Pahlmann M, Becker-Ziaja B, Happi CT, Asogun DA, Okogbenin SA, Okokhere PO, Dawodu OS, Omoike IU, Sabeti PC, Günther S, Akpede GO. (2017). Prevalence of Lassa Virus Disease (LVD) in Nigerian children with fever or fever and convulsions in an endemic area. PLoS Neglected Tropical Disease3;11(7):e0005711. doi: 10.1371/journal.pntd.0005711.

Sowunmi A, Akano K, Ntadom G, Ayede A, Oguche S, Agomo C, Okafor H, Watila I, Meremikwu M, Ogala W, Agomo P, Adowoye E, Fatunmbi B, Aderoyeje T, Happi C, Gbotosho G, Folarin O. (2017). Anaemia following Artemisinin-Based Combination Treatments of Uncomplicated Plasmodium falciparum Malaria in Children: Temporal Patterns of Haematocrit and the Use of Uncomplicated Hyperparasitaemia as a Model for Evaluating Late-Appearing Anaemia. Chemotherapy. 62(4):231-238. doi: 10.1159/000449366.

Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotton, Jonathan D’Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro II, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli III, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Brima Kargbo, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My VT Phan, Georgios Pollakis Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman W olfel, Nathan L.Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Gunther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keıta, Paul Kellam, Marion P. G. Koopmans, Jens H. Kuhn, Nicholas J. Loman, N’Faly Magassouba, Dhamari Naidoo ,Stuart T. Nichol, Tolbert Nyenswah, Gustavo Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Stroher, Isatta Wurie, Marc A. Suchard, Philippe Lemey & Andrew Rambaut. (2017). Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. 544(7650):309-315. doi: 10.1038/nature22040.

Sowunmi A, Akano K, Ayede AI, Adewoye EO, Ntadom G, Fatunmbi B, Gbotosho GO, Folarin OA, Happi CT. (2017). Early rising asexual parasitaemia in Nigerian children following a first dose of artemisinin-based combination treatments of falciparum malaria. BMC Infectious Disease17(1):110. doi: 10.1186/s12879-016-2173-z.

Akintunde Sowunmi, Kazeem Akano, Godwin Ntadom, Adejumoke I. Ayede, Folasade O. Ibironke, Temitope Aderoyeje, Elsie O. Adewoye, Bayo Fatunmbi, Stephen Oguche, Henrietta U. Okafor, Ismaila Watila, Martin Meremikwu, Philip Agomo, William Ogala, Chimere Agomo, Onikepe A. Folarin, Grace O. Gbotosho, Christian Happi. (2017), Therapeutic efficacy and effects of artemisinin-based combination treatments on uncomplicated Plasmodium falciparum-associated anaemia in Nigerian children during seven years of adoption as first-line treatments. Infectious Disease of Poverty. 6(1):36. doi: 10.1186/s40249-016-0217-7.

Olumuyiwa B. Salu, Ayorinde B. James, Bamidele O. Oke, Mercy R. Orenolu, Roosevelt A. Anyanwu, Maryam A. Abdullah, Christian Happi, Jide Idris, Ismail A. Abdus-Salam, Abdul-Salam Nasidi, Folashade T. Ogunsola, Oyewale Tomori, Sunday AOmilabu. (2016). Biosafety level-2 laboratory diagnosis of Zaire Ebola virus disease imported from Liberia to Nigeria. African Journal of Laboratory Medicine5(1), a468.doi.org/10.4102/ajlm.v5i1.468.

Olumide O Adenmosun, Christian Happi, Oluwaseyi Ogunmodede, Yemi Adesokan and Obidele Samuel Opeyemi. (2016). Preventing resurgence of Ebola Resurgence from Zoonotic Routes: A Random Assessment of Bat populations in Osun State, Nigeria. Journal of Prevention Infections Control2:2.15. DOI: 10.21767/2471-9668.100024.

Goba A, Khan SH, Fonnie M, Fullah M, Moigboi A, Kovoma A, Sinnah V, Yoko N, Rogers H, Safai S, Momoh M, Koroma V, Kamara FK, Konowu E, Yillah M, French I, Mustapha I, Kanneh F, Foday M, McCarthy H, Kallon T, Kallon M, Naiebu J, Sellu J, Jalloh AA, Gbakie M, Kanneh L, Massaly JL, Kargbo D, Kargbo B, Vandi M, Gbetuwa M, Gevao SM, Sandi JD, Jalloh SC, Grant DS, Blyden SO, Crozier I, Schieffelin JS, McLellan SL, Jacob ST, Boisen ML, Hartnett JN, Cross RW, Branco LM, Andersen KG, Yozwiak NL, Gire SK, Tariyal R, Park DJ, Haislip AM, Bishop CM, Melnik LI, Gallaher WR, Wimley WC, He J, Shaffer JG, Sullivan BM, Grillo S, Oman S, Garry CE, Edwards DR, McCormick SJ, Elliott DH, Rouelle JA, Kannadka CB, Reyna AA, Bradley BT, Yu H, Yenni RE, Hastie KM, Geisbert JB, Kulakosky PC, Wilson RB, Oldstone MB, Pitts KR, Henderson LA, Robinson JE, Geisbert TW, Saphire EO, Happi CT, Asogun DA, Sabeti PC, Garry RF; Viral Hemorrhagic Fever Consortium. (2016). An Outbreak of Ebola Virus Disease in the Lassa Fever Zone. Journal of Infectious Disease. 214(suppl 3):S110-S121.

Folarin OA, Ehichioya D, Schaffner SF, Winnicki SM, Wohl S, Eromon P, West KL, Gladden-Young A, Oyejide NE, Matranga CB, Deme AB, James A, Tomkins-Tinch C, Onyewurunwa K, Ladner JT, Palacios G, Nosamiefan I, Andersen KG, Omilabu S, Park DJ, Yozwiak NL, Nasidi A, Garry RF, Tomori O, Sabeti PC, Happi CT. (2016). Ebola Virus Epidemiolpgy and Evolution in Nigeria. Journal of Infectious Disease214(suppl 3):S102-S109.

Yozwiak NL, Happi CT, Grant DS, Schieffelin JS, Garry RF, Sabeti PC, Andersen KG. (2016). Roots, Not Parachutes: Research Collaborations Combat Outbreaks. Cell166(1):5-8. doi: 10.1016/j.cell.2016.06.029.

Robinson JE, Hastie KM, Cross RW, Yenni RE, Elliott DH, Rouelle JA, Kannadka CB, Smira AA, Garry CE, Bradley BT, Yu H, Shaffer JG, Boisen ML, Hartnett JN, Zandonatti MA, Rowland MM, Heinrich ML, Martínez-Sobrido L, Cheng B, de la Torre JC, Andersen KG, Goba A, Momoh M, Fullah M, Gbakie M, Kanneh L, Koroma VJ, Fonnie R, Jalloh SC, Kargbo B, Vandi MA, Gbetuwa M, Ikponmwosa O, Asogun DA, Okokhere PO, Folarin OA, Schieffelin JS, Pitts KR, Geisbert JB, Kulakoski PC, Wilson RB, Happi CT, Sabeti PC, Gevao SM, Khan SH, Grant DS, Geisbert TW, Saphire EO, Branco LM, Garry RF. (2016). Most neutralizing human monoclonal antibodies target novel epitopes requiring both Lassa virus glycoprotein subunits. Nature Communications.7:11544. doi: 10.1038/ncomms11544.

G. David Poznik, Yali Xue, Fernando L. Mendez, Thomas F. Willems, Andrea Massaia, Melissa A. Wilson Sayres, Qasim Ayub, Shane A. McCarthy, Apurva Narechania, Seva Kashin, Yuan Chen, Ruby Banerjee, Juan L. Rodriguez-Flores, Maria Cerezo, Haojing Shao, Melissa Gymrek, Ankit Malhotra, Sandra Louzada, Rob Desalle, Graham R. S. Ritchie, Eliza Cerveira, Tomas W. Fitzgerald, Erik Garrison, Anthony Marcketta, David Mittelman, Mallory Romanovitch, Chengsheng Zhang, Xiangqun Zheng-Bradley, Goncalo R. Abecasis, Steven A. McCarroll, Paul Flicek, Peter A. Underhill, Lachlan Coi, Daniel R. Zerbino, Fengtang Yang, Charles Lee, Laura Clarke, Adam Auton, Yaniv Erlich, Robert E. Handsaker, The 1000 Genomes Project Consortium, Carlos D. Bustamante, and Chris Tyler-Smith. (2016). Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences. Nature Genetics48(6): 593–599. doi:10.1038/ng.3559.

Osterholm M, Moore K, Ostrowsky J, Kimball-Baker K, Farrar J; Wellcome Trust-CIDRAP Ebola Vaccine Team B. (2016). The Ebola Vaccine Team B: a model for promoting the rapid development of medical countermeasures for emerging infectious disease threats. Lancet Infectious Diseases16(1):e1-9. doi: 10.1016/S1473-3099(15)00416-8.

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Kristian Graugaard Andersen, B. Jesse Shapiro, Christian B Matranga, Rachel Sealfon, Aaron E Lin, Lina M Moses, Onikepe A Folarin, Augustine Goba, Ikponmwonsa Odia, Philomena E Ehiane, Mambu Momoh, Eleina M England, Sarah Winnicki, Luis M Branco, Stephen K Gire, Eric Phelan, Ridhi Tariyal, Ryan Tewhey, Omowunmi Omoniwa, Mohammed Fullah, Richard Fonnie, Mbalu Fonnie, Lansana Kanneh, Simbirie Jalloh, Michael Gbakie, Sidiki Saffa, Kandeh Karbo, Adrianne D Gladden, James Qu, Matthew Stremlau, Mahan Nekoui, Hilary K Finucane, Shervin Tabrizi, Joseph J Vitti, Bruce Birren, Michael Fitzgerald, Caryn McCowan, Andrea Ireland, Aaron M Berlin, James Bochicchio, Barbara Tazon-Vega, Niall J Lennon, Elizabeth M Ryan, Zach Bjornson, Danny A Milner JR, Amanda K Lukens, Nisha Broodie, Megan Rowland, Megan Heinrich, Marjan Akdag, John S Schieffelin, Danielle Levy, Henry Akpan, Daniel G Bausch, Kathleen Rubins, Joseph B McCormick, Eric S Landers, Stephan Gunther, Lisa Hensley, Sylvanus Okogbenin, Stephen F Schaffner, Peter O Okokhere, S. Humarr Khan, Donald S Grant, George O Akpede, Danny A Asogun, Andreas Gnirke, Joshua Levin, Christian T. Happi, Robert F Garry, Pardis C Sabeti. (2015). Genome-sequencing from clinical and field samples uncovers ancient origins and intra-host evolution of Lassa virus. Cell162(4): 738-750. doi: 10.1016/j.cell.2015.07.20.

Park DJ, Dudas G, Wohl S, Goba A, Whitmer SLM, Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, Nosamiefan D, Yozwiak NL, Moses L, Jiang P-P, Lin AE, Schaffner SF, Bird B, Towner J, Mamoh M, Gbakie M, Kanneh L, Kargbo D, Massally JLB, Kamara FK, Konuwa E, Sellu J, Jalloh AA, Mustapha I, Foday M, Yillah M, Erickson BR, Sealy T, Blau D, Paddock C, Brault A, Amman B, Basile J, Bearden S, Belser J, Bergeron E, Campbell S, Chakrabarti A, Dodd K, Flint M, Gibbons A, Goodman C, Klena J, Mc- Mullan L, Morgan L, Russell B, Salzer J, Sanchez A, WAng D, Jungreis I, Tomkins-Tinch C, Kislyuk A, Lin MF, Chapman S, MacInnis B, Matthews A, Bochicchio J, Hensley LE, Kuhn JH, Nusbaum C, Scheiffelin JS, Birren BW, Forget M, Nichol ST, Palacios GF, Ndiaye D, Happi C, Gevao SM, Vandi MA, Kargbo B, Holmes EC, Bedford T, Gnirke A, Stroeher U, Rambaut A, Garry RF, Sabeti PC. (2015). Ebola virus epidemiology, transmission, and evolution during seven months in Sierra Leone. Cell. 161(7): 1516-26. doi: 10.1016/j.cell.2015.06.007.

Jessica N Hartnett, Matthew L Boisen1, Darin Oottamasathien, Abigail B Jones, Molly M Millett, Diana S Nelson, Ivana J Muncy, Augustine Goba, Mambu Momoh, Mohammed Fullah, Chad E Mire, Joan B Geisbert, Thomas W Geisbert, Debra L Holto, Julie A Rouelle, Chandrika B Kannadka, Ashley A Reyna, Lina M Moses, S Humarr Khan, Sahr M Gevao, Donald S Grant, James E Robinson, Christian Happi, Kelly R Pitts, Robert F Garry, Luis M Branco & the Viral Hemorrhagic Fever Consortium. (2015). Current and emerging strategies for the diagnosis, prevention and treatment of Lassa fever. Future Virology10(5): 559–584.

Matthew H. Stremlau, Kristian G. Andersen, Onikepe A. Folarin, Jessica N. Grove, Ikponmwonsa Odia, Philomena E. Ehiane, Omowunmi Omoniwa, Omigie Omoregie, Pan-Pan Jiang, Nathan L. Yozwiak, Christian B. Matranga, Xiao Yang, Stephen K. Gire, Sarah Winnicki, Ridhi Tariyal, Stephen F. Schaffner, Peter O. Okokhere, Sylvanus Okogbenin, George O. Akpede, Danny A. Asogun, Dennis E. Agbonlahor, Peter J. Walker, Robert B. Tesh, Joshua Z. Levin, Robert F.Garry, Pardis C. Sabeti, and Christian T. Happi. (2015). Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa. PLoS Neglected Tropical Disease 9(3): e0003631. doi:10.1371/journal.pntd.0003631.

Falajiki FY, Akinola O, Abiodun OO, Happi CT, Sowunmi A and Gbotosho GO. (2015). Amodiaquine-Ciprofloxacin: a potential combination therapy against drug resistant malaria. Parasitology4: 1-6.

Jens H. Kuhn, Kristian G. Andersen, Sylvain BAIZE, Yīmíng Bào, Sina Bavari, Nicolas Berthet, Olga Blinkova, J. Rodney Brister, Anna N. Clawson, Joseph Fair, Martin Gabriel, Robert F. Garry, Stephen K. Gire, Augustine Goba, Jean-Paul Gonzalez, Stephan Günther, Christian T. Happi, Peter B. Jahrling, Jimmy Kapetshi, Gary Kobinger, Jeffrey R. Kugelman, Eric M. Leroy, Gael Darren Maganga, Placide K. Mbala, Lina M. Moses, Jean-Jacques Muyembe-Tamfum, Magassouba N’Faly, Stuart T. Nichol, Sunday A. Omilabu, Gustavo Palacios, Daniel J. Park, Janusz T. Paweska, Sheli R. Radoshitzky, Cynthia A. Rossi, Pardis C. Sabeti, John C. Schieffelin, Randal J. Schoepp, Rachel Sealfon, Robert Swanepoel, Jonathan S. Towner, Jiro Wada, Nadia Wauquier, Nathan L. Yozwiak, Pierre Formenty. (2014). Nomenclature- and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014. Viruses6(11):4760-99. doi: 10.3390/v6114760.

Accordion Content

Matranga CB, Andersen KG, Winnicki S, Busby M, Gladden AD, Tewhey R, Stremlau M, Berlin A, Gire SK, England E, Moses LM, Mikkelsen TS, Odia I, Ehiane PE, Folarin O, Goba A, Kahn S, Grant DS, Honko A, Hensley L, Happi C, Garry RF, Malboeuf CM, Birren BW, Gnirke A, Levin JZ, Sabeti PC. (2014). Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples. Genome Biololgy15(11):519.

Onikepe A Folarin, Anise N Happi and Christian T Happi. (2014). Empowering African Genomics for infectious disease control. Genome Biology15 (11):515.

Schieffelin JS, Shaffer JG, Goba A, Gbakie M, Gire SK, Colubri A, Sealfon RS, Kanneh L, Moigboi A, Momoh M, Fullah M, Moses LM, Brown BL, Andersen KG, Winnicki S, Schaffner SF, Park DJ, Yozwiak NL, Jiang PP, Kargbo D, Jalloh S, Fonnie M, Sinnah V, French I, Kovoma A, Kamara FK, Tucker V, Konuwa E, Sellu J, Mustapha I, Foday M, Yillah M, Kanneh F, Saffa S, Massally JL, Boisen ML, Branco LM, Vandi MA, Grant DS, Happi C, Gevao SM, Fletcher TE, Fowler RA, Bausch DG, Sabeti PC, Khan SH, Garry RF; the KGH Lassa Fever Program, the Viral Hemorrhagic Fever Consortium, and the WHO Clinical Response Team. (2014). Clinical Illness and Outcomes in Patients with Ebola in Sierra Leone. New England Journal of Medicine371(22): 2092-100. doi: 10.1056/NEJMoa1411680.

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Badejo JA, Abiodun OO, Akinola O, Happi CT, Sowunmi A, Gbotosho GO. (2014). Interaction between rifampicin, amodiaquine and artemether in mice infected with chloroquine resistant Plamodium bergheiMalaria Journal. 5;13:299. doi: 10.1186/1475-2875-13-299.

Falade MO, Akinboye DO, Gbotosho GO, Ajaiyeoba EO, Happi TC, Abiodun OO, Oduola AM. (2014). In vitro and In vivo Antimalarial Activity of Ficus thonningii Blumes (Moraceae) and Lophira alata banks (Ochnaceae), Indentified from the Ethnomedicine of the Nigerian Middle Belt. Journal of Parasitological Research2014:972853. doi: 10.1155/2014/972853.

Asogun D, Tobin EA, Gunther S, Happi C, Ikponwosa O. (2014). Dealing with the unseen. Fear and stigma in Lassa fever. Int J Infect Dis04: (21). 258. DOI:10.1016/j.ijid.2014.03.881

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